archetype (adl_version=1.4; uid=a6e5f197-a2b0-486f-8477-3913fd8ecbb8)
	openEHR-EHR-CLUSTER.art_container_details.v0

concept
	[at0000]	-- ART container details
language
	original_language = <[ISO_639-1::en]>
description
	original_author = <
		["name"] = <"Heather Leslie">
		["organisation"] = <"Atomica Informatics">
		["email"] = <"heather.leslie@atomicainformatics.com">
		["date"] = <"2021-11-30">
	>
	details = <
		["en"] = <
			language = <[ISO_639-1::en]>
			purpose = <"To record specific details about the contents of a container stored for the purposes of assisted reproduction treatment.">
			use = <"Use to record specific details about the cells or tissue products stored in a container for the purposes of assisted reproduction treatment.

The container may contain sperm, testicular tissue, ovarian tissue, or one or more oocyte or embryos.">
			keywords = <"container, assister reproduction, sperm, testicular, ovarian, tissue, oocyte, zygote, embryo, blastocyst", ...>
			misuse = <"">
			copyright = <"© openEHR Foundation">
		>
	>
	lifecycle_state = <"in_development">
	other_contributors = <"Vebjørn Arntzen, Oslo University Hospital", "Liv Laugen, Oslo University Hospital", "Peter Fedorcsak, Oslo University Hospital">
	other_details = <
		["licence"] = <"This work is licensed under the Creative Commons Attribution-ShareAlike 4.0 International License. To view a copy of this license, visit http://creativecommons.org/licenses/by-sa/4.0/.">
		["custodian_organisation"] = <"openEHR Foundation">
		["references"] = <"Ashford, P., et al., Standard terminology for reproductive tissue and cell products for use in ART. Human Reproduction Open, 2019. 2019(2): p. hoz005.">
		["original_namespace"] = <"org.openehr">
		["original_publisher"] = <"openEHR Foundation">
		["custodian_namespace"] = <"org.openehr">
		["MD5-CAM-1.0.1"] = <"8BCF2217BA076EF7A61AAB60A41F5502">
		["build_uid"] = <"fddd7540-e9c9-42f0-b387-75039709781f">
		["revision"] = <"0.0.1-alpha">
	>

definition
	CLUSTER[at0000] matches {    -- ART container details
		items cardinality matches {1..*; unordered} matches {
			ELEMENT[at0001] occurrences matches {0..*} matches {    -- Product ID
				value matches {
					DV_IDENTIFIER matches {*}
				}
			}
			ELEMENT[at0026] occurrences matches {0..*} matches {    -- Product class
				value matches {
					DV_CODED_TEXT matches {
						defining_code matches {
							[local::
							at0028,    -- Sperm
							at0029,    -- Testicular tissue
							at0030,    -- Oocyte
							at0031,    -- Ovarian tissue
							at0032,    -- Zygote
							at0033]    -- Embryo
						}
					}
					DV_TEXT matches {*}
				}
			}
			ELEMENT[at0034] occurrences matches {0..1} matches {    -- Oocyte maturation stage
				value matches {
					DV_CODED_TEXT matches {
						defining_code matches {
							[local::
							at0038,    -- Not specified
							at0039,    -- Immature
							at0040,    -- Maturing
							at0041]    -- Mature
						}
					}
					DV_TEXT matches {*}
				}
			}
			ELEMENT[at0035] occurrences matches {0..1} matches {    -- Embryo development stage
				value matches {
					DV_CODED_TEXT matches {
						defining_code matches {
							[local::
							at0051,    -- Not specified
							at0052,    -- Cleavage stage
							at0053,    -- Morula stage
							at0054]    -- Blastocyst stage
						}
					}
					DV_TEXT matches {*}
				}
			}
			ELEMENT[at0042] occurrences matches {0..1} matches {    -- Embryo preservation day
				value matches {
					DV_CODED_TEXT matches {
						defining_code matches {
							[local::
							at0043,    -- Not specified
							at0044,    -- Day 1
							at0045,    -- Day 2
							at0046,    -- Day 3
							at0047,    -- Day 4
							at0048,    -- Day 5
							at0049,    -- Day 6
							at0050]    -- Day 7
						}
					}
					DV_TEXT matches {*}
				}
			}
			ELEMENT[at0036] occurrences matches {0..1} matches {    -- Type of preservation
				value matches {
					DV_CODED_TEXT matches {
						defining_code matches {
							[local::
							at0055,    -- Not specified
							at0056,    -- Vitrification
							at0057,    -- Slow active freezing
							at0058,    -- Slow passive freezing
							at0059]    -- Not cryopreserved
						}
					}
					DV_TEXT matches {*}
				}
			}
			ELEMENT[at0037] occurrences matches {0..1} matches {    -- Sperm procurement method
				value matches {
					DV_CODED_TEXT matches {
						defining_code matches {
							[local::
							at0060,    -- Not specified
							at0061,    -- Ejaculated
							at0062,    -- Aspirated epididymal
							at0063,    -- Aspirated testicular
							at0064]    -- Biopsy testicular
						}
					}
					DV_TEXT matches {*}
				}
			}
			ELEMENT[at0065] occurrences matches {0..1} matches {    -- Sperm preparation
				value matches {
					DV_CODED_TEXT matches {
						defining_code matches {
							[local::
							at0066,    -- Not specified
							at0067,    -- Unwashed
							at0068,    -- Washed
							at0069]    -- Prepared
						}
					}
					DV_TEXT matches {*}
				}
			}
			ELEMENT[at0002] occurrences matches {0..1} matches {    -- Date of preservation
				value matches {
					DV_DATE_TIME matches {*}
				}
			}
			ELEMENT[at0006] occurrences matches {0..1} matches {    -- Preservation protocol ID
				value matches {
					DV_TEXT matches {*}
				}
			}
			ELEMENT[at0008] occurrences matches {0..1} matches {    -- Disposition date
				value matches {
					DV_DATE_TIME matches {*}
				}
			}
			ELEMENT[at0009] occurrences matches {0..1} matches {    -- Disposition
				value matches {
					DV_TEXT matches {*}
					DV_CODED_TEXT matches {
						defining_code matches {
							[local::
							at0020,    -- None
							at0021,    -- Autologous treatment
							at0022,    -- Donation to treatment
							at0023,    -- Donation to research
							at0024,    -- Transferred to other biobank
							at0025]    -- Discarded
						}
					}
				}
			}
			ELEMENT[at0010] occurrences matches {0..1} matches {    -- Expiry date
				value matches {
					DV_DATE_TIME matches {*}
				}
			}
			ELEMENT[at0012] occurrences matches {0..1} matches {    -- Comment
				value matches {
					DV_TEXT matches {*}
				}
			}
		}
	}


ontology
	term_definitions = <
		["en"] = <
			items = <
				["at0000"] = <
					text = <"ART container details">
					description = <"Details about the contents of a container stored for the purposes of assisted reproduction treatment.">
				>
				["at0001"] = <
					text = <"Product ID">
					description = <"The unique identifier for the reproductive cell or tissue product in the container.">
					comment = <"This data element has multiple occurrences to allow for more than one oocyte or embryo, or other product per container. May be identical with applicable ID element in OBSERVATION.embryo_assessment or other related archetypes.">
				>
				["at0002"] = <
					text = <"Date of preservation">
					description = <"The date and/or time when the container and its' contents were preserved.">
				>
				["at0006"] = <
					text = <"Preservation protocol ID">
					description = <"The identifier for the cryopreservation procedure.">
				>
				["at0008"] = <
					text = <"Disposition date">
					description = <"The date and/or time when the container and its' contents were disposed of.">
				>
				["at0009"] = <
					text = <"Disposition">
					description = <"The reason for disposing the contents of the container.">
				>
				["at0010"] = <
					text = <"Expiry date">
					description = <"The date beyond the contents are not to be used.">
				>
				["at0012"] = <
					text = <"Comment">
					description = <"Additional narrative about the ART straw contents, not captured in other fields.">
				>
				["at0020"] = <
					text = <"None">
					description = <"The contents of the container are not used.">
				>
				["at0021"] = <
					text = <"Autologous treatment">
					description = <"The contents of the container are used for autologous treatment.">
				>
				["at0022"] = <
					text = <"Donation to treatment">
					description = <"The contents of the container are donated to heterologous treatment.">
				>
				["at0023"] = <
					text = <"Donation to research">
					description = <"The contents of the container are donated to research.">
				>
				["at0024"] = <
					text = <"Transferred to other biobank">
					description = <"The container is transferred to an other biobank.">
				>
				["at0025"] = <
					text = <"Discarded">
					description = <"The contents of the container are discarded.">
				>
				["at0026"] = <
					text = <"Product class">
					description = <"Class of cell or tissue product stored in the container.">
					comment = <"Use of an established product classification is preferred, e.g. ISBT128 or EUTC.">
				>
				["at0028"] = <
					text = <"Sperm">
					description = <"The male gamete.">
				>
				["at0029"] = <
					text = <"Testicular tissue">
					description = <"Fragment of testicular tissue.">
				>
				["at0030"] = <
					text = <"Oocyte">
					description = <"The female gamete.">
				>
				["at0031"] = <
					text = <"Ovarian tissue">
					description = <"Fragment of the ovary.">
				>
				["at0032"] = <
					text = <"Zygote">
					description = <"A single cell resulting from fertilization of a mature oocyte by a spermatozoon and before completion of the first mitotic division.">
				>
				["at0033"] = <
					text = <"Embryo">
					description = <"The biological organism resulting from the development of the zygote, until eight completed weeks after fertilization, equivalent to 10 weeks of gestational age.">
				>
				["at0034"] = <
					text = <"Oocyte maturation stage">
					description = <"The stage of maturation of the oocyte.">
				>
				["at0035"] = <
					text = <"Embryo development stage">
					description = <"The stage of development of the embryo.">
				>
				["at0036"] = <
					text = <"Type of preservation">
					description = <"The technique used to preserve the tissue or cells.">
				>
				["at0037"] = <
					text = <"Sperm procurement method">
					description = <"The method used to procure sperm.">
				>
				["at0038"] = <
					text = <"Not specified">
					description = <"No information about the oocyte maturation stage is provided or not applicable.">
				>
				["at0039"] = <
					text = <"Immature">
					description = <"An oocyte at prophase of meiosis I (i.e. an oocyte at the germinal vesicle (GV) stage).">
				>
				["at0040"] = <
					text = <"Maturing">
					description = <"An oocyte that has progressed from prophase I but has not completed telophase I, thus does not exhibit the first polar body.">
				>
				["at0041"] = <
					text = <"Mature">
					description = <"An oocyte at metaphase of meiosis II, exhibiting the first polar body and with the ability to become fertilized.">
				>
				["at0042"] = <
					text = <"Embryo preservation day">
					description = <"The number of days following insemination on which the embryo was preserved (calendar days).
">
				>
				["at0043"] = <
					text = <"Not specified">
					description = <"No information about the embryo preservation day is provided or not applicable.">
				>
				["at0044"] = <
					text = <"Day 1">
					description = <"Embryo preserved on day 1 after insemination.">
				>
				["at0045"] = <
					text = <"Day 2">
					description = <"Embryo preserved on day 2 after insemination.">
				>
				["at0046"] = <
					text = <"Day 3">
					description = <"Embryo preserved on day 3 after insemination.">
				>
				["at0047"] = <
					text = <"Day 4">
					description = <"Embryo preserved on day 4 after insemination.">
				>
				["at0048"] = <
					text = <"Day 5">
					description = <"Embryo preserved on day 5 after insemination.">
				>
				["at0049"] = <
					text = <"Day 6">
					description = <"Embryo preserved on day 6 after insemination.">
				>
				["at0050"] = <
					text = <"Day 7">
					description = <"Embryo preserved on day 7 after insemination.">
				>
				["at0051"] = <
					text = <"Not specified">
					description = <"No information about the embryo development stage is provided or not applicable.">
				>
				["at0052"] = <
					text = <"Cleavage stage">
					description = <"Embryo beginning at the two cell stage and up to, but not including, the morula stage.">
				>
				["at0053"] = <
					text = <"Morula stage">
					description = <"Embryo after completion of compaction, typically 4 days after insemination or ICSI.">
				>
				["at0054"] = <
					text = <"Blastocyst stage">
					description = <"Embryo at the blastocyst stage, containing a fluid filled central cavity, an outer layer of cells and an inner group of cells. Typically occurs at day 5–6 after insemination.">
				>
				["at0055"] = <
					text = <"Not specified">
					description = <"No coded information is provided about the type of preservation.">
				>
				["at0056"] = <
					text = <"Vitrification">
					description = <"Product cryopreserved using a technique that leads to a glass-like solidification.">
				>
				["at0057"] = <
					text = <"Slow active freezing">
					description = <"Product cryopreserved using a computerized controlled-rate freezer.">
				>
				["at0058"] = <
					text = <"Slow passive freezing">
					description = <"Product cryopreserved without using a computerized controlled-rate freezer.">
				>
				["at0059"] = <
					text = <"Not cryopreserved">
					description = <"Fresh or refrigerated product.">
				>
				["at0060"] = <
					text = <"Not specified">
					description = <"Collection or recovery method is not specified, or not applicable.">
				>
				["at0061"] = <
					text = <"Ejaculated">
					description = <"Sperm procured from ejaculate.">
				>
				["at0062"] = <
					text = <"Aspirated epididymal">
					description = <"Sperm procured by aspiration from epididymis.">
				>
				["at0063"] = <
					text = <"Aspirated testicular">
					description = <"Sperm procured by percutaneous aspiration from testis.">
				>
				["at0064"] = <
					text = <"Biopsy testicular">
					description = <"Sperm procured by biopsy of testis.">
				>
				["at0065"] = <
					text = <"Sperm preparation">
					description = <"Information about the preparation of sperm.">
				>
				["at0066"] = <
					text = <"Not specified">
					description = <"No information about the preparation of sperm is provided, or not applicable.">
				>
				["at0067"] = <
					text = <"Unwashed">
					description = <"Raw ejaculate.">
				>
				["at0068"] = <
					text = <"Washed">
					description = <"he ejaculate has been washed by centrifugation in a buffer solution.">
				>
				["at0069"] = <
					text = <"Prepared">
					description = <"Viable sperm cells have been isolated from other contents of the seminal fluid.">
				>
			>
		>
	>